Plant MITE

SE3720446

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11514
Solanum lycopersicum
SE3720446
Mutator
M9
SL2.40ch04:15623659-15623981
ATTTTTTAG
TAGGCATAATACATA

Secondary structure and sequence

TSD TIR

5'

3'

ATTTTT               -AATAT     TT     A  T       -AC    A  C           G GT     C      A     A    TGTATAAAG                  AT          T  TCC       CATTTTT  T TT
      TAGGCATAATACATA      ACTCT  AACTT GC TCGAATT   ATTT TG CCTTCAACTTT G  GTGCA AAGTAG CACTT AACT         TTGAATAAATAGACACAT  GTCCTACATG CA   TACATGT       TG C  
      |||||||||||||||      |||||  ||||| || |||||||   |||| || ||||||||||| |  ||||| |||||| ||||| ||||         ||||||||||||||||||  |||||||||| ||   |||||||       || |   
      ATCCGTATTATGTAT      TGGGA  TTGAA TG AGTTTAA   TGAA AC GGAGGTTGAAA T  TACGT TTTGTT GTGAA TTGA         AATTTATTTATTTGTGTA  CAGGATGTAC GT   ATGTGCA       GC G  
TTTTTT               ATAACC     -T     C  T       AAT    -  T           G AT     A      C     A    TAGGTTGAA                  CT          C  TTT       -TCCTGT  T CA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720446

ATTTTTTAGGCATAATACATAAATATACTCTTTAACTTAGCTTCGAATTACATTTATGCCCTTCAACTTTGGGTGTGCACAAGTAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCCTACATGTCATTTTTTGTCTTACGTCGTGTCCTACGTGTATTTTGCCATGTAGGACTCATGTGTTTATTTATTTAAAAGTTGGATAGTTAAAGTGCTTGTTTATGCATTATGAAAGTTGGAGGTCAAAGTTAAAATTTGATGTCAAGTTTAGGGTCCAATATATGTATTATGCCTATTTTTT

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