SE3740449

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11517
  • Solanum lycopersicum
  • SE3740449
  • CACTA
  • Ca3
  • SL2.40ch12:46694953-46695105
  • TAA
  • ACACTATAAGAAAATTGTTAATTACACGGGGATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                          C        CCTTCTATTT                   C   C   T   TCTT
  ACACTATAAGAAAATTGTTAATTACA GGGGATTT          TCCTGGGGATTAGTATGAA ATT GCA GAA    
  |||||||||||||||||||||||||| ||||||||          ||||||||||||||||||| ||| ||| |||     
  TGTGATATTCTTTTGACAATTAATGT CCCCTAAA          AGGACCTTTAATTATACTT TAA TGT CTT    
AA                          A        ----------                   T   A   -   TTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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