SE3720450

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11518
  • Solanum lycopersicum
  • SE3720450
  • Mutator
  • M11
  • SL2.40ch04:54649217-54649615
  • CAACTTTAG
  • GGAATTTTTAACCAAACTAAGTCATTATATAAAACAATTTACTAAAGTAATACATTTTTCTAAAATTTTACAAAATTAGTATAAACGTATTTCACGGTAACGTTTTAGGGTATATTTTATTATTTTAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CAACTTTA   AT                            ACA                CA     C  A                                                          A       -ATTAACA  A              G     GTA            CTTT            T
        GGA  TTTTAACCAAACTAAGTCATTATATAAA   ATTTACTAAAGTAATA  TTTTT TA AATTTTACAAAATTAGTATAAACGTATTTCACGGTAACGTTTTAGGGTATATTTTATT TTTTAAA        GC TTAGGTTGATATAC TTACT   AGTAACGTTTTA    TAAAACGTTATT 
        |||  ||||||||||||||||||||||||||||   ||||||||||||||||  ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        || |||||||||||||| |||||   ||||||||||||    |||||||||||| T
        CCT  AAAATTGGTTTGATTCGGTAATATATTT   TAAGTGGTTTTATTAT  AAAAA AT TTAAAATGTTTTGATCATATTTGCATAAGGTGTCATTGCAAAATCCTATATAAAATAA AAAATTT        CG AGTCTAACTATATG AATGA   TCATTGCAAAAT    ATTTTGCAATGA 
GATTTCAA   CC                            CAG                AC     A  A                                                          -       ACAACTAC  C              G     GTG            CCCC            C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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