SE3710458

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11526
  • Solanum lycopersicum
  • SE3710458
  • Tc1/Mariner
  • St12
  • SL2.40ch02:34643568-34643834
  • TA
  • TACTCCCTTTGTCCAACA

Secondary structure and sequence

TSD    TIR
5'



3' 
                  -     ---    -----  CTATACTATTTT --  A  TC   CAATACTTGCCCACTTTATGAAATCAATGGATAATTTTTCACTTACTTCCTGCTTTACCCTTATCACTAATTATAGTCATTTC
TACTCCCTTTGTCCAACA GAAGT   TATC     CA            A  GG TG  CAA                                                                                   
|||||||||||||||||| |||||   ||||     ||            |  || ||  |||                                                                                   C
ATGAGGGAGACAGGTTGT ATGAA   ATGA     GA            A  GT GT  GAA                                                                                   
                  T     CAA    TAACT  ------------ AC  -  --   GAATTCTTTGATAATTATCTTCTCATTAAAATGATATTATGGGAAACTTATATTATTTTTGTCACAGAACTTTTTAGATTATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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