SE3730459

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11527
  • Solanum lycopersicum
  • SE3730459
  • hAT
  • Hat27
  • SL2.40ch10:23754650-23754786
  • ATTTTACC
  • CTTAGTTGCGCGGACTCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTTACC  TA     G         CACTTTT    C  ---CACC   C        TTCA    TACA
        CT  GTTGC CGGACTCTT       GATG CA       CGT TCGGATTC    CAAA    
        ||  ||||| |||||||||       |||| ||       ||| ||||||||    ||||    C
        GA  CAACG GCCTGAGAA       TTAC GT       GCA AGCCTAAG    GTTT    
CCATTTTA  TA     A         ---TTTT    A  TACCCAC   C        --CG    TCAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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