SE3720461

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11529
  • Solanum lycopersicum
  • SE3720461
  • Mutator
  • M9
  • SL2.40ch11:9381894-9382218
  • TTTTAAAAA
  • AAAAGGCATAATACATAAATGTGTCCTTTAACTTGACTTCAAATCATATTTATGCCCTTCAACTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTA                 A  GT T    T      A       --   T    A  C    C      GGAT         TAAA     A    TGTATAAAG     C          ACAT          T   CC       ----    TTTTGT
     AAAAGGCATAATACATA AT  G CCTT AACTTG CTTCAAA  TCA ATTT TG CCTT AACTTT    GTGCACAAA    CATTT AACT         TTGAA AAATAGACAC    GTCCTACATG CAT  TACATGT    CATT      
     ||||||||||||||||| ||  | |||| |||||| |||||||  ||| |||| || |||| ||||||    |||||||||    ||||| ||||         ||||| ||||||||||    |||||||||| |||  |||||||    ||||      C
     TTTTCCGTATTATGTAT TA  C GGGA TTGAAT GAAGTTT  AGT TAAA AC GGAG TTGAAA    TACGTGTTT    GTGAA TTGA         AATTT TTTATTTGTG    CAGGATGTAC GTG  ATGTGCA    GTGA      
AAAAA                 A  AC T    T      C       TA   -    -  T    C      GTAT         CTCC     A    TAGGTTGAA     A          AACT          C   TT       TCCT    TGCATC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End