SE3730462

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11530
  • Solanum lycopersicum
  • SE3730462
  • hAT
  • Hat6
  • SL2.40ch12:12002243-12002641
  • ATCTAAAG
  • CAGTGTTATCAAAGGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCTAAAG                 AAAA   CAAAAAAAGCTCCAAGGTCTGTGGAGCTTTAAGCACAAAGCGCAAATAAAGTGTGCTCTTTAACAAAAAAAAGGCGCAAAGGAAGAAAAGAATAAAATATATATGTTTAGTCCAAGACTAATAATTATAAACACGAATGACAAATATATGACCAACGAAATTGAAAAAA
        CAGTGTTATCAAAGGCG    GCG                                                                                                                                                                         
        |||||||||||||||||    |||                                                                                                                                                                         A
        GTCACAATAGTTTCCGC    GCG                                                                                                                                                                         
GAAATCTA                 ----   AAATTCACGCAAAATCGGGATTTCGCTCTGAGTTTTGCACAACTCGCGAAGCGGAGCGAAATACACGCGAAATCACAACAGTAGTTCCAAGGTTCCGTTCGTAAAGGAACGGTTACTCGGAGAATACTTCTTAAACTTCGATTTATTAACTATAAAGAGAGATAGTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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