SE3720463

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11531
  • Solanum lycopersicum
  • SE3720463
  • Mutator
  • M2
  • SL2.40ch05:20385833-20386156
  • TTTATCTAG
  • AGGGATAATGCACAAGTACCCTCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTACTACCCCCCTGAACTTATTTTATTAATGATTTTCTACCCCTTCTTGACATATGTGGCACTATCTTGTGGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATCT     T                                    T     A    C     C       A    C  C    C C               TAA                C   A A                ---------  G    TAA
       AGGGA AATGCACAAGTACCCTCTCAACCTATGCCCGAAATC CAGAG CACA TTATA TATACTA GGTC TA TACC C CTGAACTTATTTTAT   TGATTTTCTACCCCTT TTG C TATGTGGCACTATCTT         GT GGCC   
       ||||| |||||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||| |||| || |||| | |||||||||||||||   |||||||||||||||| ||| | ||||||||||||||||         || ||||   C
       TCCCT TTACGTGTTCATGGGGGAGTTGGATACGGGCTTTAG GTTTC GTGT AATAT ATATGAT CCAG AT ATGG G GACTTGAATAAAATA   ATTAAAAGATGGGGAA AGC G ATGCACCGTGATAGAA         CA TTGG   
TCTATTT     T                                    T     A    A     A       C    A  A    A A               TTC                A   C G                CTTTTTTTT  G    TCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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