Plant MITE

SE3720464

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11532
Solanum lycopersicum
SE3720464
Mutator
M14
SL2.40ch12:45546118-45546434
ATATAATAG
ATAGGGAAAATGCACAAGTACCCCCTAGACTATGACCGAAATTTCAGAGACACGCCTTAACTATACGAAGGTCTCATTACCCCCTGAACTTAATTTTTTTTGTAATTGTGTGCATCTTTGTCTTACGTGGCACAGTCCGTGACTCCACAC

Secondary structure and sequence

TSD TIR

5'

3'

ATATA           G             -                   C     C            T  G       C    C  CC       AAT       G     G           --GT           CAG    --TGA    A   AATTG
     ATAGGGAAAAT CACAAGTACCCCC TAGACTATGACCGAAATTT AGAGA ACGCCTTAACTA AC AAGGTCT ATTA CC  TGAACTT   TTTTTTT TAATT TGTGCATCTTT    CTTACGTGGCA   TCCG     CTCC CAC     
     ||||||||||| ||||||||||||| ||||||||||||||||||| ||||| |||||||||||| || ||||||| |||| ||  |||||||   ||||||| ||||| |||||||||||    |||||||||||   ||||     |||| |||     A
     TATCCCTTTTA GTGTTCATGGGGG ATCTGATACTGGCTTTAAG TCTCT TGTGGAATTGAT TG TTCCAGG TAAT GG  ACTTGAA   AAAAAAA ATTAA ACACGTGGAAA    GAATGTACTGT   AGGT     GAGG GTG     
TAATG           A             G                   T     A            T  A       A    A  -A       ---       -     A           AAAT           ---    TTATA    -   CGTGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720464

ATATAATAGGGAAAATGCACAAGTACCCCCTAGACTATGACCGAAATTTCAGAGACACGCCTTAACTATACGAAGGTCTCATTACCCCCTGAACTTAATTTTTTTTGTAATTGTGTGCATCTTTGTCTTACGTGGCACAGTCCGTGACTCCACACAATTGACGTGCGTGGGAGATATTTGGATGTCATGTAAGTAAAAAAGGTGCACAAAATTAAAAAAAAAAGTTCAAGGATAATAGGACCTTAGTTTAGTTAAGGTGTATCTCTTGAATTTCGGTCATAGTCTAGGGGGGTACTTGTGAATTTTCCCTATGTAAT

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