Plant MITE

SE3730466

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11534
Solanum lycopersicum
SE3730466
hAT
Hat28
SL2.40ch03:56465978-56466172
ATTAAAAG
AGTGGC

Secondary structure and sequence

TSD TIR

5'

3'

ATTAAAAGC      -    --   --  AATTTCTTAAAAGGTGTCCAAAAATAGCAACTTGTTATGTTAAGGGTGTTCAAAATAGATCATTTAATCAT
         AGTGGC GGAA  CCA  GA                                                                       
         |||||| ||||  |||  ||                                                                        
         TCACCG ATCG  GCA  AC                                                                       
AAATAAAAT      C    GT   TC  AGTTCCCATAGGTTAACTTGTGGGAAACAACCTCTTTTTTATCGTATATATGTTCATTTAACTATATGCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3730466

ATTAAAAGCAGTGGCGGAACCAGAAATTTCTTAAAAGGTGTCCAAAAATAGCAACTTGTTATGTTAAGGGTGTTCAAAATAGATCATTTAATCATTTCGTATATCAATTTACTTGTATATATGCTATTTTTTCTCCAACAAAGGGTGTTCAATTGGATACCCTTGACACTACGTGGCTACGCCACTTAAAATAAA

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