SE3720469

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11537
  • Solanum lycopersicum
  • SE3720469
  • Mutator
  • M6
  • SL2.40ch10:62462794-62463469
  • AATTTTTTG
  • TTGGGAAAATTGTATAAAATAGCAAATTAA

Secondary structure and sequence

TSD    TIR
5'



3'
AATTTT     AA    -G    AA         T  -TAACCTAAATTAA    A     T   G    A T              A        TATCTAAA      CAGCGTCTCTCTCCCAGGAATCTCGCTCGCCACTCCCCATTCTCGCTCGCCTCTCTCGCTTTATACACAGAAGTGTATAATTCTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAATGTATATCTTCATGTTATACACTTAATTATACAATTTACAAACATTTTACTTCAAAAATTGCAGAGAAAAAGGCCAACGAATTATACAATTGCAGTGA
      TTGGG  AATT  TATA  ATAGCAAAT AA              ATAG ATAGC AGG TTTG T TAATTGTGCTCCAT GCAAACAT        ATTTGC                                                                                                                                                                                                                                        
      |||||  ||||  ||||  ||||||||| ||              |||| ||||| ||| |||| | |||||||||||||| ||||||||        ||||||                                                                                                                                                                                                                                         
      AATCC  TTGA  GTGT  TATCGTTTG TT              TATT TATCG TTT AAAC G ATTAACGCGAGGTA CGTTTGTA        ACATAT                                                                                                                                                                                                                                        
 TTTTT     CG    AA    -A         T  TTAAAGTATAAACA    A     -   G    - T              C        --TTTTTG      TAAGCGATATGTATATGTTCACATATTAAACGACCGGATTTAACATATTAAGCGACCGGATAAAACGACGTTAACATATTAAACAAAACGTATATCAACTTAGCTTAATTTTACATACATATAACGTATTAATATTCAAATATCGTTTTTCTATATACAAAAAGAGCGAAATATGTTTTTGTCTTTGTGTTATATATGTGAAGACAACATATTTCGATCTCTTTTAACATAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End