SE3720471

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11539
  • Solanum lycopersicum
  • SE3720471
  • Mutator
  • M1
  • SL2.40ch05:3175773-3176492
  • TTTATTTAA
  • AAGGGAAAAGGATCTAATATACCCATCAACTTTGTCATTTGGTGCTGATATACCCCTCGTTATAAAAGTGGCTCATATATGCCCTTAC

Secondary structure and sequence

TSD    TIR
5'



3'
TTTATTT           A   AAT    CCA                 T         C    C     A       C                CGTTAT     C  C            ----C    GTT  AAAAT  C  ---- C          C TT AACGTATTTTAAAAAATTAATTTTAAATTTATATTTATTACTTCTAATTTTTCTAAAAAAATTATTTAGGGGTATATATGATTCTTCTATCAAAGTTCAAGGTATATTTTAATTTTTTTGATACATAAATTATTTTTTGACTTCTTTTATTATAATTAGAATAAAAAATTAAACTATTTTTTTGTGTGTGTATTGTAATTTAAT
       AAGGGAAAAGG TCT   ATAC   TCAACTTTGTCATTTGG GCTGATATA CCCT GTTAT AAAGTGG TCATATATGCCCTTAC      ACAAA GG TCACATATACCT     TGCC   AC     GA TC    A ATATACCCTT A  T                                                                                                                                                                                                            
       ||||||||||| |||   ||||   ||||||||||||||||| ||||||||| |||| ||||| ||||||| ||||||||||||||||      ||||| || ||||||||||||     ||||   ||     || ||    | |||||||||| |  |                                                                                                                                                                                                            T
       TTCCCTTTTCC AGA   TATG   AGTTGAAACAGTAAATC CGACTATAT GGGA CAATA TTTCACC AGTATATATGGGGATG      TGTTT CC AGTGTATATGGA     GAGT   TG     CC TT    T TTTTTTTTAT T  A                                                                                                                                                                                                            
AATTTAT           C   --C    AAG                 T         A    A     C       A                AACATT     A  A            AAAAA    ---  -----  -  TACT -          - -- AAATTAGATTTAAAAATAATAAAAAAAGATTTTTTATATTAGGGTATACTCATTTAAATTAGGAGCAGTTTGTATAAAAAAAACTGAAAAAAAACAAAGTTACTGATTAAATATTAATAATAAAACTATTAGTTTAAATAAATACAAAGTGATTATAAGAACATTTTGAATAACATCTACTAGTTTTAAAAAGAAGCTTATGCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End