Plant MITE

SE3720476

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11544
Solanum lycopersicum
SE3720476
Mutator
M2
SL2.40ch04:53960155-53960478
TTATAACTA
TTATAACTAGGGAAAATGCACAAGTACCCCCTCAACCTATGCCCGAAATCCCAGATACACACTTATACTATACTAAGTACCTATTACCCCCCTGAACTTATTTTATAAGTAATTTTCTATCCCCTTTTAGCTTACGTGGCACTAGTTTG

Secondary structure and sequence

TSD TIR

5'

3'

        ACT     A     A     A                        C    TAC              C    TA            C              A    A    C      C                    G    AAAAAAAA     CCA
   TTATA   AGGGA AATGC CAAGT CCCCCTCAACCTATGCCCGAAATC CAGA   ACACTTATACTATA TAAG  CCTATTACCCCC TGAACTTATTTTAT AGTA TTTT TATCCC TTTTAGCTTACGTGGCACTA TTTG        GTCAA   
   |||||   ||||| ||||| ||||| |||||||||||||||||||||||| ||||   |||||||||||||| ||||  |||||||||||| |||||||||||||| |||| |||| |||||| |||||||||||||||||||| ||||        |||||   T
   AATAT   TCCCT TTACG GTTCA GGGGGAGTTGGATACGGGCTTTAG GTCT   TGTGAATATGATAT ATTC  GGATAATGGGGG ACTTGAATAAAATA TTAT AAAA ATGGGG AAAATCGGATGCACCGTGAT GAAC        CGGTT   
ATC     ---     A     G     A                        A    --C              A    CA            A              A    A    A      A                    A    -----ACC     TGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720476

TTATAACTAGGGAAAATGCACAAGTACCCCCTCAACCTATGCCCGAAATCCCAGATACACACTTATACTATACTAAGTACCTATTACCCCCCTGAACTTATTTTATAAGTAATTTTCTATCCCCTTTTAGCTTACGTGGCACTAGTTTGAAAAAAAAGTCAACCATTGTTTGGCCCACAAGATAGTGCCACGTAGGCTAAAAAGGGGTAAAAAAATATTAATAAAATAAGTTCAAGGGGGTAATAGGACCTTAATATAGTATAAGTGTCTCTGAGATTTCGGGCATAGGTTGAGGGGGAACTTGGGCATTATCCCTTATAACTA

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