Plant MITE

SE3710477

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11545
Solanum lycopersicum
SE3710477
Tc1/Mariner
St1
SL2.40ch09:62874717-62874979
TA
TACTCCCTCCGTCCGGTATTGTTTGTCATG

Secondary structure and sequence

TSD TIR

5'

3'

             C  TAT           ---GTTT   TTTTTAGAGTCAAACTAAAAAAAACTTTGACTAACATTTTAAGATGCATTTTTTCATCATATTAATATGCAAAAAATTGTAATTTGTAGTACT
TACTCCCTCCGTC GG   TGTTTGTCATG       CTA                                                                                             
||||||||||||| ||   |||||||||||       |||                                                                                              
ATGAGGGAGGCAG CC   ACAAACAGTAC       ATA                                                                                             
             C  TTT           AACGCGA   GCTATCAGTTAAACTGATTAAAAATTTCCATTTAATCTAGTGTAATTAAGCTATAAAATTTATTTTTTAATCTATAAAATTTTGATATACTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710477

TACTCCCTCCGTCCGGTATTGTTTGTCATGGTTTCTATTTTTAGAGTCAAACTAAAAAAAACTTTGACTAACATTTTAAGATGCATTTTTTCATCATATTAATATGCAAAAAATTGTAATTTGTAGTACTTTTCATATAGTTTTAAAATATCTAATTTTTTATTTAAAATATCGAATTAATGTGATCTAATTTACCTTTAAAAATTAGTCAAATTGACTATCGATAAGCGCAACATGACAAACATTTCCCGACGGAGGGAGTA

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