Plant MITE

SE3710478

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11546
Solanum lycopersicum
SE3710478
Tc1/Mariner
St4
SL2.40ch09:60800925-60801186
TA
TACTCCCACTGACCCATTTTATATGACACTTTCATTTT

Secondary structure and sequence

TSD TIR

5'

3'

       A   A C        A  A      ---      ATTC  A  T      -     A         GAAA   GC       A    CA   T    A   --GA     ATA        -A   ATGT
TACTCCC CTG C CATTTTAT TG CACTTT   CATTTT    GA AT TAAACA GTTTA CTTTGATCG    TTT  TTATGGA TTTT  GAT TTTG AAT    AATTT   TATTTATA  ACT    
||||||| ||| | |||||||| || ||||||   ||||||    || || |||||| ||||| |||||||||    |||  ||||||| ||||  ||| |||| |||    |||||   ||||||||  |||     
ATGAGGG GGC G GTAAAATA AC GTGAAA   GTAAAA    CT TA GTTTGT CAGAT GAAACTGGC    AAA  AGTATCT GGAA  TTA AAAT TTA    TTAAA   ATAAATAT  TGA    
       A   A A        C  C      AGC      ----  C  T      T     A         ATAC   -A       A    AA   T    C   ATAG     AAC        CA   GAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710478

TACTCCCACTGACCCATTTTATATGACACTTTCATTTTATTCGAAATTTAAACAGTTTAACTTTGATCGGAAATTTGCTTATGGAATTTTCAGATTTTTGAAATGAAATTTATATATTTATAAACTATGTAAAGAGTACTATAAATACAAAAATTGATAATTCTAAATATTAAAAGGATCTATGAAAAACATACGGTCAAAGATAGACTTGTTTGTATCTCAAAATGCGAAAAGTGCCACATAAAATGAGACGGAGGGAGTA

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