SE3720480

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11548
  • Solanum lycopersicum
  • SE3720480
  • Mutator
  • M2
  • SL2.40ch10:38961736-38962063
  • TATAATAAA
  • AGGGATAATGCCCAAGTACCCCCCTCAACCTATGTCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTCGGCCTACGTGACACT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAATAA           C           C                                                            C              TAA            C     C          A    ATCTTG    TCCAACGATGA
        AGGGATAATGC CAAGTACCCCC TCAACCTATGTCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCC TGAACTTATTTTAT   TAATTTTTTACC CTTTT GGCCTACGTG CACT      TGGG           
        ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||| ||||| |||||||||| ||||      ||||           T
        TCCCTATTACG GTTCATGGGGG AGTTGGATACGGGCTTTAGGGTCTCTGTGTGAATATGATATGATTCCAGGATAATGGGGG ACTTGAATAAAATA   ATTAAAAGATGG GAAAA TCGGATGCAC GTGA      ACCT           
AAATAATA           T           -                                                            A              TTC            A     A          C    --CCAA    TTTTTTTCAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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