SE3730485

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11553
  • Solanum lycopersicum
  • SE3730485
  • hAT
  • Hat6
  • SL2.40ch03:12168531-12168911
  • TATCCAAT
  • CAGTGTTATCAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATCCAAT   T          CTAAAA    AAAA      --     T  GTGGGGTCTTTAAGCGCAAAGCGCAAATAAAGTGGGTTTAATGAAAAAGGCGCAAAGGGAGAAAAGAATACAAATATATATTTTAGTCCAAGTCTAATAATTATAAACATAAATGACAAAGATATGACCAAAGAAATTGAAAA
        CAG GTTATCAAAG      GCGC    AAGCTC  TAAGG CC                                                                                                                                               
        ||| ||||||||||      ||||    ||||||  ||||| ||                                                                                                                                                
        GTC CAATAGTTTC      CGCG    TTCGGG  TTCGC TC                                                                                                                                               
TAACCTAT   C          ------    CGAA      AC     -  CGAGTTTTGCACAATTCGCAAAGCGGAGCGAAATACACGTGAAGTACAACAGTAGTTCCAAGATTCCGTTTGTAAAGGAACGGTTACTCGGAGAATACTTCTTCACTTTGATTATTTAACTATAAAGTGAAATAGTATTAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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