SE3740490

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11558
  • Solanum lycopersicum
  • SE3740490
  • CACTA
  • Ca1
  • SL2.40ch08:1953193-1953656
  • TAA
  • ACTATGTTTGGATCATTGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAC   A         C       TCC     ACTGTATTGTTACTATACCTACAATGTTTGTTTTGATTGTTACTTAAAATGTATTGTACTGTATTGTTAAATTTCGTTGTTACGTAACAATGGAAACCCCTATTTTATGGAACAACCAATTTGGTGTATTCCCATTGTTACTTAATTTTTTTTTCAATTATATCTTTTCATAATATTTTAAAATACTATTTTGCCCTTTA
    ACT TGTTTGGAT ATTGTTA   ATTGT                                                                                                                                                                                                        
    ||| ||||||||| |||||||   |||||                                                                                                                                                                                                        T
    TGA ACAAACCTA TAACAAT   TGATA                                                                                                                                                                                                        
AATA   A         A       ---     ACAAAGTATTACATAACATAACATAACATGACATAACATACCATCTATGTTACAAACCGATCTAACATAACAAACAACAACAAATCATTGTAAAATTAACAAACCAAACTAACATAGCATGACATAATATTAAATACTTAAATGAATTTATAAGCATTAATAAGATCCCATCCTCCAAACTGATCTAAATTTATTAATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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