Plant MITE

SE3710491

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11559
Solanum lycopersicum
SE3710491
Tc1/Mariner
St1
SL2.40ch09:63909490-63909752
TA
TACTCCCTCCGTCCGGAATTGTTTGTCAT

Secondary structure and sequence

TSD TIR

5'

3'

                AA              ACATT      - AGTC   TTGACTAATTTTCAAAGATAAATTAGATCACATTAATTCGATATTTTAAACAAAAAAATTAGCAATTCTAAAACTATATGAAAA
TACTCCCTCCGTCCGG  TTGTTTGTCATGTT     TATCGA A    AAT                                                                                    
||||||||||||||||  ||||||||||||||     |||||| |    |||                                                                                    G
ATGAGGGAGGCAGGCT  AATAAACAGTATTA     AAGATA A    AAT                                                                                    
                AC              -----      A ----   CTCAATTTAATATTTTTAAAACTGATTGTAAAATTTTACGTAAAAAAGTAGTATAATTATACGTTTTTTAACATTGAATATCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710491

TACTCCCTCCGTCCGGAATTGTTTGTCATGTTACATTTATCGAAAGTCAATTTGACTAATTTTCAAAGATAAATTAGATCACATTAATTCGATATTTTAAACAAAAAAATTAGCAATTCTAAAACTATATGAAAAGTACTATAAGTTACAATTTTTTGCATATTAATATGATGAAAAAATGCATTTTAAAATGTTAGTCAAAATTTTTATAATTTAACTCTAAAAATAGAAATTATGACAAATAACATCGGACGGAGGGAGTA

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