SE3730495

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11563
  • Solanum lycopersicum
  • SE3730495
  • hAT
  • Hat17
  • SL2.40ch01:75637847-75637982
  • TTTTTTGG
  • GGCTATGTTGCTTGAATCTTCAAAAATGTCATTGGATGTGTGTTGGATCCTTCAAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTT     T        -AA  TT         CA   G  G              CAA    AG
      GGCTA GTTGCTTG   TC  CAAAAATGT  TTG AT TGTGTTGGATCCTT   AAAT  
      ||||| ||||||||   ||  |||||||||  ||| || ||||||||||||||   ||||  T
      TTGAT CAACGAGC   AG  GTTTTTACA  GGC TG GCACAGCCTAGGAA   TTTA  
GGTTTT     T        CTG  TT         AC   G  G              TTC    CG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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