Plant MITE

SE3740497

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11565
Solanum lycopersicum
SE3740497
CACTA
Ca2
SL2.40ch00:14373434-14373647
TTG
GCACTACAACAAAAATAACCATTAGCGGCATTTAAT

Secondary structure and sequence

TSD TIR

5'

3'

TT                   CA           T   -TCT     -   ----  -    TATGTATTTTTAGCGGCAATTGTCACACTTTGTATATGTACCTAAAGC
  GCACTACAACAAAAATAAC  TTAGCGGCATT AAT    TAATT GCC    GC TAAA                                                
  |||||||||||||||||||  ||||||||||| |||    ||||| |||    || ||||                                                C
  TGTGATGTTGTTTTTGTTG  AATCGCCGTAA TTA    TGTGA TAT    CA GATT                                                
GT                   AA           T   TAAC     T   TTCT  C    TCAGAAATGGCCGTAATCAATTCACAGTCATCTTGGTTACAGCGATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3740497

TTGCACTACAACAAAAATAACCATTAGCGGCATTTAATTCTTAATTGCCGCTAAATATGTATTTTTAGCGGCAATTGTCACACTTTGTATATGTACCTAAAGCCTTTAGCGACATTGGTTCTACTGACACTTAACTAATGCCGGTAAAGACTTTAGCACTCTTTATTAGTGTCAATATTTAATGCCGCTAAAAGTTGTTTTTGTTGTAGTGTTG

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