SE3720499

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11567
  • Solanum lycopersicum
  • SE3720499
  • Mutator
  • M39
  • SL2.40ch12:55476335-55477002
  • GTGAAATAG
  • GAGGAAAGGATCAAAATAGTCTCTCTTCTTTGGGTTAAGGCTCAAAGTGATCCTTGAGTTTTCACATGGAGCACTAGTAGTCTCTCATGTTTGCAATATTGCTACACTTTTGGTCCTCTTTCAAAATTTTACCTATTTTTTTGCATTGATTTTTATTCA

Secondary structure and sequence

TSD    TIR
5'



3'
GTGAAATAGA         A                -                                                                   C       CTA             CT   -        A          T           TA    -TAACC      T                A                -AAA   C     CA    AA    --T    G               C   -     G       CG        G    -    A -- GGTTCATCACGATAATTTCACGCGCAATAGTATA
          GAGGAAAGG TCAAAATAGTCTCTCT TCTTTGGGTTAAGGCTCAAAGTGATCCTTGAGTTTTCACATGGAGCACTAGTAGTCTCTCATGTTTG AATATTG   CACTTTTGGTCCT  TTC AAAATTTT CCTATTTTTT GCATTGATTTT  TTCA      TATGTA GGGATGTTCAATCGTC TTTTATATATTTAGTA    TAA AACTC  TATC  AGAA   GTGA AAGAAAAACACTTTG TTT GTTTA TAGAAAT  TATTGCAG TAAA GTCG G  A                                  
          ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||  ||| |||||||| |||||||||| |||||||||||  ||||      |||||| |||||||||||||||| ||||||||||||||||    ||| |||||  ||||  ||||   |||| ||||||||||||||| ||| ||||| |||||||  |||||||| |||| |||| |  |                                   
          CTCCTTTCT AGTTTTATTAGGGGGG AGAAATCCAATTCTGAGTTTCACTAGGAACTCAAAAGTGTACCTTGTGATTATCAGGGAGTACAAAC TTATAAC   GTGAAAACCAGGA  AGG TTTTAAAA GGGTAAAAAA TGTAATTAAAA  AGGT      ATATGT CCTTACAGGTTAGCAG AAAATATATAAATTAT    ATT TTGAG  ATAG  TCTT   CACT TTCTTTTTGTGGAAC AAA CAAGT ATCTTTA  ATGACGTC ATTT ATTA T  T                                  
AGATAAAGTG         G                T                                                                   A       CAC             -T   A        C          T           -C    TTTAAA      T                A                ATTG   A     --    AC    TTC    A               -   T     G       TA        G    G    - TG AGAATTGTATACTGAAACGTCCTTTTCTTTTTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End