Plant MITE

SE3720501

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11569
Solanum lycopersicum
SE3720501
Mutator
M9
SL2.40ch03:51262194-51262518
TTATTTATA
AGGCATAATACATATATTGGACCCTAAACTTGATTTCAAATT

Secondary structure and sequence

TSD TIR

5'

3'

TTATTTAT              TAT  GA    -A                TTAACTT  A   C C     CACAA       AC        T    ATCCAACTTTTA    T   A       -----A      CATGGCACAATACACGTAGGACACCAC
        AGGCATAATACATA   TG  CCCT  AACTTGATTTCAAATT       TG CCT C ATTTT     TGTACAA  AGACACTT AACT            AATA ATA ACACATG      GTCCTA                           
        ||||||||||||||   ||  ||||  ||||||||||||||||       || ||| | |||||     |||||||  |||||||| ||||            |||| ||| |||||||      ||||||                            
        TCCGTATTATGTAT   AC  GGGA  TTGAACTGAAGTTTAG       AC GGA G TGAAA     ACGTGTT  TCTGTGAA TTGA            TTGT TAT TGTGTAT      TGTACA                           
ATATTTAT              -TT  AC    AA                TGTAAAT  G   A T     CCTAC       CA        T    ACATATTTCAAC    T   C       ACATGA      GTAGAATGTATAGTAAAAAACAGGATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720501

TTATTTATAGGCATAATACATATATTGGACCCTAAACTTGATTTCAAATTTTAACTTTGACCTCCCATTTTCACAATGTACAAACAGACACTTTAACTATCCAACTTTTAAATATATAAACACATGAGTCCTACATGGCACAATACACGTAGGACACCACGTAGGACAAAAAATGATATGTAAGATGACATGTAGTACATATGTGTCTATTTGTTCAACTTTATACAAGTTTAAGTGTCTACTTGTGCACATCCAAAGTTGAAGGGCATAAATGTGATTTGAAGTCAAGTTAAAGGGCACATTTATGTATTATGCCTTATTTATA

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