SE3750504

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11572
  • Solanum lycopersicum
  • SE3750504
  • PIF/harbinger
  • To4
  • SL2.40ch04:62429778-62430185
  • TAA
  • AGAGCCTGTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  A          CTCA      -----A         AACTGACTTAAAAGCTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAACAGCTTATTTTAAGCTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTCTTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCT
  AG GCCTGTTTGG    GCTTAA      AGCTGGTCA                                                                                                                                                                      
  || ||||||||||    ||||||      |||||||||                                                                                                                                                                      T
  TC CGGGCAAACC    CGAATT      GTCGAAATT                                                                                                                                                                      
AA  C          TACC      ATTTTT         TTTTCATGAAAATTTTCACGACTTTGAATAAAAATTTTATTAGTCAATACGCAAACCTATTTTCACGACTTCAACAATACAGTTTGCACTTTTCCTTTTTTACCTTCTTTCTTTACAATCCCAATATACCCATTAAACCTCTAACATGTTTTTATCATTCGTGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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