SE3740505

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11573
  • Solanum lycopersicum
  • SE3740505
  • CACTA
  • Ca2
  • SL2.40ch01:6712383-6712595
  • TTA
  • ACACTACAACAAAAATGATCAATAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                   CAA   CAAAA     ---------------TTC   -  -   A     -  - TGTATATTTAGCGGCAATTGACACTCTTTGTATATGTCCC
  ACACTACAACAAAAATGAT   TAG     ATTAA                  TCA AT TGT GCTAA AT A                                        
  |||||||||||||||||||   |||     |||||                  ||| || ||| ||||| || |                                        T
  TGTGATGTTGTTTTTACTG   ATC     TAATT                  ACA GA TTC GAAAT GC G                                        
AT                   AAA   -TCCG     TATAACTGTAATTATTTC   C  C   A     G  C TAAGCAATTCACGGTAATCTTGGTTACGCGATTTCCGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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