Plant MITE

SE3710507

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11575
Solanum lycopersicum
SE3710507
Tc1/Mariner
St5
SL2.40ch11:46058851-46059127
TA
TACTCCCTTTGTCCCTAATTACTTGTCCACTTTT

Secondary structure and sequence

TSD TIR

5'

3'

        T                         TCTTTT     TGTC    ---ATTAC  -   CATTTTGACAAATCAAGAAAGGACAATTTCTTTTACCTATTATACCCTCAATTAATTACTTTGAAAAAGGTAGAA
TACTCCCT TGTCCCTAATTACTTGTCCACTTTT      TTAGT    CCTA        TT GTC                                                                           
|||||||| |||||||||||||||||||||||||      |||||    ||||        || |||                                                                           C
ATGAGGGA ACAGGGATTAATGAACAGGTGAAAA      AATCG    GGAT        TG TAC                                                                           
        T                         ---CTT     -TGT    AATTCTTT  T   TAACTGTATCACTCAAATGGTAAAATGGAGATAATTAATATCTCACCCACTTAATTTTTAATTCTAAAAGTTCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710507

TACTCCCTTTGTCCCTAATTACTTGTCCACTTTTTCTTTTTTAGTTGTCCCTAATTACTTGTCCATTTTGACAAATCAAGAAAGGACAATTTCTTTTACCTATTATACCCTCAATTAATTACTTTGAAAAAGGTAGAACTTCTTGAAAATCTTAATTTTTAATTCACCCACTCTATAATTAATAGAGGTAAAATGGTAAACTCACTATGTCAATCATTGTTTTCTTAATAGGTGTGCTAATTCAAAAGTGGACAAGTAATTAGGGACATAGGGAGTA

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