Plant MITE

SE3720508

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11576
Solanum lycopersicum
SE3720508
Mutator
M9
SL2.40ch02:19172857-19173172
TTTAAAAAA
AAAGGCATAATATATTAATATGCCCTTTAACTTGACTTCA

Secondary structure and sequence

TSD TIR

5'

3'

TTTAAA     C         T   A                    AATCACA     T                 G         AA                    -       CAA  A  CAT       A      CC    C  TATTTTTTGT  TA
      AAAGG ATAATATAT AAT TGCCCTTTAACTTGACTTCA       TTTAT TCCTTCAACTTTGGGTG GCACAAGTA  CACTTAAATTTGTATAAATT GAACAAA   AC CA   GTCCTAC TGATAT  TACA GT          CC  
      ||||| ||||||||| ||| ||||||||||||||||||||       ||||| ||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||   || ||   ||||||| ||||||  |||| ||          ||  C
      TTTCC TATTATGTA TTA ACGGGAAATTGAACTGGAGT       AAATA AGGAAGTTGAAACCCAT TGTGTTCAT  GTGAATTTGAACATATTTGA CTTGTTT   TG GT   CAGGATG ACTGTG  ATGT CA          GG  
 AAAAA     T         T   C                    -------     C                 A         CA                    A       ATC  A  ACT       C      CT    A  ----TCCTGT  TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720508

TTTAAAAAAGGCATAATATATTAATATGCCCTTTAACTTGACTTCAAATCACATTTATTTCCTTCAACTTTGGGTGGGCACAAGTAAACACTTAAATTTGTATAAATTGAACAAACAAACACACATGTCCTACATGATATCCTACACGTTATTTTTTGTCCTACATGGTGTCCTACATGTATCGTGTCACGTAGGACTCATGAGTCTATTTGTTCAAGTTTATACAAGTTTAAGTGACTACTTGTGTATACCCAAAGTTGAAGGACATAAATGAGGTCAAGTTAAAGGGCACATTTATGTATTATTCCTTTAAAAA

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