SE3710509

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11577
  • Solanum lycopersicum
  • SE3710509
  • Tc1/Mariner
  • St1
  • SL2.40ch01:59733262-59733581
  • N.A.
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
            G   CAGTCCACTTTTAAATGTCATAATTTCCATTTTTAGGGTCAAACTATAAAATTTGAATAACATTTTACAATATATTCTTTCATCATATTCATATGCAAAAACTTGTAATTTATAATACTTTTTGTATAGTTTTTAAATATGTAATTCT
        TACT CCT                                                                                                                                                    
        |||| |||                                                                                                                                                    T
        GGTG ATG                                                                                                                                                    
TTTAACTT    -   ATAACATGCCTACCTCATAAACAGACCTAACGTAATTTATAGCATGAGGGAGGCAGGTAAAAATAAACAGTACAGTACGAAAAGTTTTCAGTTAAAATGATTAAAAGTTTTAATTTAATCTAATGTAATTAAGCTATAAAATTTATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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