SE3720510

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11578
  • Solanum lycopersicum
  • SE3720510
  • Mutator
  • M9
  • SL2.40ch07:60938865-60939179
  • TTTCAAAAA
  • AAAGGCATATAATATATA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTCAA         TA       AATAT   ATTT              -TTAC    A  TC          G GT                  A    TGTATAAAG     C         CACAT   C      T   TTTTTGTCCT     GTGT
      AAAGGCATA  ATATATA     ACC    AACTTGGTTTCGAA     ATTT TG  CTTCAACTTT G  GTGCACAAGTAGACACTT AACT         TTGAA AAATAGACA     GTC TACATG CAT          ACATG    
      |||||||||  |||||||     |||    ||||||||||||||     |||| ||  |||||||||| |  |||||||||||||||||| ||||         ||||| |||||||||     ||| |||||| |||          |||||     
      TTTCCGTAT  TGTATAT     TGG    TTGAACCGAAGTTT     TGAA AC  GAGGTTGAAA T  TACGTGTTTGTTTGTGAA TTGA         AATTT TTTATTTGT     CAG ATGTAC GTG          TGTGC    
AAAAAA         TA       -AACC   -GAT              TAAAT    -  TT          G AT                  A    TAGGTTGAA     A         TTACT   A      T   -------TTT     ATCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End