Plant MITE

SE3730511

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11579
Solanum lycopersicum
SE3730511
hAT
Hat6
SL2.40ch04:53115035-53115439
GTTAGAGT
TCAGTGTTATCAAAGGC

Secondary structure and sequence

TSD TIR

5'

3'

GTTAGAG                 -----    ---- TT      --  TT  GCCCTGAAGCGAGGCTCAAAACGTGTTGAGCGCTTCGCCTCGCTTTATGTGCGCTTCAGTGTCGTCATCAAGGTTCTAAGATAAACATTTCCTTGCCAATGAGCCTCTTATTAAGAAATGAAACTAAATAATTGATACTTCTCTTTATCATAAAA
       TCAGTGTTATCAAAGGC     GCGC    T  AAGCGC  GC  AA                                                                                                                                                           
       |||||||||||||||||     ||||    |  ||||||  ||  ||                                                                                                                                                            
       GGTCACAATAGTTTCCG     CGCG    T  TTCGAG  TC  AG                                                                                                                                                           
TGAGATT                 CTTTT    TTTT --      AT  CA  CACCCTCCGACCCTCGAAATTCGCGTTTCGTGTTTATTTCGCACCCGAAATTATTTTTTCCGCGTTTCCCTCTTTTCTTATGTTTACATATACAAATCAGTTTCTGATTTAATATTTGTACTTACTGTTTATATACTGGTTTCTTTAACATAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3730511

GTTAGAGTCAGTGTTATCAAAGGCGCGCTTTAAGCGCGCTTAAGCCCTGAAGCGAGGCTCAAAACGTGTTGAGCGCTTCGCCTCGCTTTATGTGCGCTTCAGTGTCGTCATCAAGGTTCTAAGATAAACATTTCCTTGCCAATGAGCCTCTTATTAAGAAATGAAACTAAATAATTGATACTTCTCTTTATCATAAAAAAAATACAATTTCTTTGGTCATATATTTGTCATTCATGTTTATAATTTAGTCTTTGACTAAACATATACATTTGTATTCTTTTCTCCCTTTGCGCCTTTTTTATTAAAGCCCACGCTTTATTTGTGCTTTGCGCTTAAAGCTCCCAGCCTCCCACGAACCTTAGAGCTTTTTTTGCGCTTTTCGCCTTTGATAACACTGGTTAGAGT

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