SE3730514

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11582
  • Solanum lycopersicum
  • SE3730514
  • hAT
  • Hat27
  • SL2.40ch05:58721324-58721460
  • TGTATTAC
  • GTATTACCTATGTTGATCGGACTCTTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
T   T   -  AT    ATC          AAAATGTCAATG     G  -------             ---A  TA
 GTA TAC CT  GTTG   GGACTCTTCA            GGTGC TC       TCGGATTCTCCAG    AC  
 ||| ||| ||  ||||   ||||||||||            ||||| ||       |||||||||||||    ||   
 CAT ATG GA  TAAC   CCTGAGAAGT            CTACG AG       AGCCTAAGAGGTT    TG  
    T   T  AT    GCA          -------GAAAA     G  TGGGTAC             ATTA  TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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