Plant MITE

SE3720515

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11583
Solanum lycopersicum
SE3720515
Mutator
M2
SL2.40ch10:36526105-36526429
TAATATTTT
AATATTTTGGGATAATGCCCAAGTACCCCCTCAACCTATGCCTGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTATCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTCGACCTATGTGGCACTATCTTG

Secondary structure and sequence

TSD TIR

5'

3'

 T      TT    T     C       C             C                                            T                   TAA                  CGA              TC   ----TGGGCC    GA
  AATATT  GGGA AATGC CAAGTAC CCCTCAACCTATG CTGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTA CCCCCTGAACTTATTTTAT   TAATTTTTTACCCCTTTT   CCTATGTGGCACTA  TTG          CAAC  
  ||||||  |||| ||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||   ||||||||||||||  |||          ||||   
  TTATAA  CCCT TTACG GTTCATG GGGAGTTGGATAC GGCTTTAGAGTCTCTGTGTGAATATGATATGATTCCAGGATAAT GGGGGACTTGAATAAAATA   ATTAAAAGATGGGGAAAA   GGATGCACCGTGAT  AAC          GTTG  
TT      -T    T     T       A             A                                            -                   TTC                  ATC              CA   TTTTTTTTCA    GT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720515

TAATATTTTGGGATAATGCCCAAGTACCCCCTCAACCTATGCCTGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTATCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTCGACCTATGTGGCACTATCTTGTGGGCCCAACGATGGTTGACTTTTTTTTCAAACTAGTGCCACGTAGGCTAAAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGAGATTTCGGACATAGGTTGAGGGAGTACTTGTGCATTTTCCCTAATATTTT

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