Plant MITE

SE3710522

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11590
Solanum lycopersicum
SE3710522
Tc1/Mariner
St3
SL2.40ch02:28004301-28004553
TA
TACTCCCTCCGTTTAAAAAAGAATG

Secondary structure and sequence

TSD TIR

5'

3'

        C            A   ACCCTATTTCCTTTTTA  C GTTTAAAAAAGAATGATCATTTTTCTTTTTTGACAACACTTTAACTTTAACTTTCCACGTGACATGTTTTAAGACCACAAAATTAAAGG
TACTCCCT CGTTTAAAAAAG ATG                 GT T                                                                                         
|||||||| |||||||||||| |||                 || |                                                                                         A
ATGAGGGA GCAAATTTTTTT TAC                 CA G                                                                                         
        A            C   -----------------  - AACAAACTGAACCTTGCCTTAAATTCTTTTCTTTCTTCTGAAAAATTAAAACACCAAGATTTAATTTCAATACAGTTTACATAGTTTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710522

TACTCCCTCCGTTTAAAAAAGAATGACCCTATTTCCTTTTTAGTCTGTTTAAAAAAGAATGATCATTTTTCTTTTTTGACAACACTTTAACTTTAACTTTCCACGTGACATGTTTTAAGACCACAAAATTAAAGGACATTTGATACATTTGACATAACTTTAATTTAGAACCACAAAATTAAAAAGTCTTCTTTCTTTTCTTAAATTCCGTTCCAAGTCAAACAAGACCATCTTTTTTTAAACGAAGGGAGTA

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