SE3720526

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11594
  • Solanum lycopersicum
  • SE3720526
  • Mutator
  • M14
  • SL2.40ch11:10919504-10919826
  • AAGAAAAAA
  • GGGAAAATG

Secondary structure and sequence

TSD    TIR
5'



3'
AAGAAAAAA         CACA    -           A    C    A   CAT   C                        C    C      TA     T       --A    ATA   -C     T           CAG   --   A    -   AAATT
         GGGAAAATG    AGTA CCCCCTAGACT TGAC GAAA TCT   AGA ACACCTTAACTAAACTAAGGTCCT TTAC TCTTGA  TTATT TTTTGTA   TTTT   CAC  TTTTG CTTACGTGGCA   TCC  GTA CTCC ATG     
         |||||||||    |||| ||||||||||| |||| |||| |||   ||| |||||||||||||||||||||||| |||| ||||||  ||||| |||||||   ||||   |||  ||||| |||||||||||   |||  ||| |||| |||     G
         CCCTTTTAC    TCAT GGGGGATCTGA ACTG CTTT AGA   TTT TGTGGAATTGATTTGATTCCAGGA AATG GGGGCT  AATAA AAAATAT   AAAA   GTG  AAAAC GAATGCACTGT   AGG  TAT GAGG TGC     
AAAAAAGAA         ATAA    A           A    A    A   --T   T                        T    A      TG     T       ATC    CAC   AA     T           ---   TT   A    G   GCGGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End