SE3740528

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11596
  • Solanum lycopersicum
  • SE3740528
  • CACTA
  • Ca2
  • SL2.40ch04:58111447-58111660
  • TAC
  • CACTACAACAAAAATAACTTTTAGCGGCATTAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAC               A   T           A   ATTGA    AATAAAGAGTGCTAAAGTCTTTACCGGCATTAGTTAATTGCCACTAGAACCAATATCGCT
   CACTACAACAAAAAT ACT TTAGCGGCATT AAT     TACT                                                            
   ||||||||||||||| ||| ||||||||||| |||     ||||                                                            A
   GTGATGTTGTTTTTA TGG AATCGCCGTAA TTA     TTAA                                                            
TAT               C   T           A   -AGAA    CGGCGATTTATACATAAAAATCTCCGTTAACAGTGAGAAACATATACAGGGATTTCAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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