Plant MITE

SE3740529

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11597
Solanum lycopersicum
SE3740529
CACTA
Ca2
SL2.40ch12:2899517-2899728
TTA
ACACTATAACAAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TT        A      CAATTT           A   ---------------------------A    - ATTAATAAAAAGTACTAATGTCTTTATCAGCATTAGTTAAGTGTCATTA
  ACACTATA CAAAAA      TTAGCGGTAAT AAT                            GACA C                                                 
  |||||||| ||||||      ||||||||||| |||                            |||| |                                                  
  TGTGATAT GTTTTT      AATTGCCATTA TTA                            TCAC G                                                 
AT        A      --ACTC           A   ATCGTTAATAACAACTTATACATAAAAA    C TTAATCGTGAGAAATATACACAGCGATTTCCGAAATCGCTGCAACCTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3740529

TTACACTATAACAAAAACAATTTTTAGCGGTAATAAATAGACACATTAATAAAAAGTACTAATGTCTTTATCAGCATTAGTTAAGTGTCATTAGATCCAACGTCGCTAAAGCCTTTAGCGACACATATAAAGAGTGCTAATTGCCACTAAAAATACATATTCAACAATAATTGCTAATTAATTACCGTTAACTCATTTTTGATATAGTGTTA

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