SE3720530

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11598
  • Solanum lycopersicum
  • SE3720530
  • Mutator
  • M33
  • SL2.40ch02:45208834-45209155
  • CTTTAATAG
  • GGCATAATTCATAAACGTGAACCTTAACTTGACGTTAGTTGACAACAATGGCTCTTAACTTTAAATGTGCATATGTAAATACTTAAACTTGTATAAAGTTGAACAAATTGACAC

Secondary structure and sequence

TSD    TIR
5'



3'
CTTTAATA        T      C    ACC    C            GA A  A      C    C   AA         T    A        C          T       ATT     ATTCAT  TACATGGTAACCTTTAAGAAAATTTTGTGTCCTA
        GGCATAAT CATAAA GTGA   TTAA TTGACGTTAGTT  C AC ATGGCT TTAA TTT  ATGTGCATA GTAA TACTTAAA TTGTATAAAG TGAACAA   GACAC      CC                                  
        |||||||| |||||| ||||   |||| ||||||||||||  | || |||||| |||| |||  ||||||||| |||| |||||||| |||||||||| |||||||   |||||      ||                                   
        CCGTATTA GTATTT TATT   AATT AACTGCGGTCAA  G TG TACTGG AATT AAA  TACACGTGT CATT GTGAATTT AACGTATTTT ACTTGTT   CTGTG      CA                                  
TAATTTCA        T      A    AAA    T            AC C  A      C    A   AC         T    C        A          C       CAT     ------  CAGGATGTACCGTACTATGTGCATCCTATGGTTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End