SE3720533

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11601
  • Solanum lycopersicum
  • SE3720533
  • Mutator
  • M33
  • SL2.40ch12:5639303-5639625
  • TTCATATTG
  • GGCGTAATGCATAAACATATCCCTTAACTTGACGTCAATTGACAACCATGATCTTTAACTTTGGGTGTGCACAAGTAGTCACTTAAACTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTCATATT                  AT             G     T  C    A  A       C            C      T       A    TATT        AAAA    C   TTC  C         A CC      -ACAAAT      C
         GGCGTAATGCATAAACAT  CCCTTAACTTGAC TCAAT GA AACC TG TCTTTAA TTTGGGTGTGCA AAGTAG CACTTAA CTTG    AAATTGAG    TGGA ACA   GT TTACATGAC C  TACATG       TTGTGT 
         ||||||||||||||||||  ||||||||||||| ||||| || |||| || ||||||| |||||||||||| |||||| ||||||| ||||    ||||||||    |||| |||   || ||||||||| |  ||||||       |||||| C
         CCGTATTATGTATTTGTA  GGGAATTGAACTG AGTTG TT TTGG AC GGAGGTT AAACTTACACGT TTCATC GTGAATT GAAC    TTTAACTT    ATCT TGT   CA GATGTACTG G  ATGTGC       AGTACA 
TTATACTTT                  CT             A     C  A    C  A       A            C      T       C    --TT        GTCC    T   TCA  A         C TT      ATCCTGC      A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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