Plant MITE

SE3710534

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11602
Solanum lycopersicum
SE3710534
Tc1/Mariner
St1
SL2.40ch12:37653445-37653701
TA
TACTCCCTTCGTGTAAAATTAATTGTCATGATTTTTTTTAGAGTCAA

Secondary structure and sequence

TSD TIR

5'

3'

         C  G  AAA   A        ---AT               ACTATAAGAAC     TCAACATTT       TATATTTCATCATATTGATATGCAAAAAACTGTAATTTGTAGTGTTTTTCGTATAGTT
TACTCCCTT GT TA   TTA TTGTCATG     TTTTTTTAGAGTCAA           TTTGA         TATGATG                                                          
||||||||| || ||   ||| ||||||||     |||||||||||||||           |||||         |||||||                                                           
ATGAGGGAG CA GT   AAT AACAGTAC     GAAAAAATTTCAGTT           AAACT         GATTAAA                                                          
         A  G  GAA   A        AACAT               -----------     ---------       AATTTCATTTTAATCTAATGCAATTAAACTATAAAAAAATTTTTTTATCTATAAGTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710534

TACTCCCTTCGTGTAAAATTAATTGTCATGATTTTTTTTAGAGTCAAACTATAAGAACTTTGATCAACATTTTATGATGTATATTTCATCATATTGATATGCAAAAAACTGTAATTTGTAGTGTTTTTCGTATAGTTTTTGAATATCTATTTTTTTAAAAAAATATCAAATTAACGTAATCTAATTTTACTTTAAAAATTAGTCAAATTGACTTTAAAAAAGTACAACATGACAAATAAAAGTGGACAGAGGGAGTA

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