SE3720540

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11608
  • Solanum lycopersicum
  • SE3720540
  • Mutator
  • M9
  • SL2.40ch11:47151055-47151376
  • AAATAAAAG
  • CATGATATATAAATGTGTCGTTTAACTTGGTTTTAAATTATATTTATGTCCTTCAACTTT

Secondary structure and sequence

TSD    TIR
5'



3'
AAATAAAAGA           A  GT T G  T      G         A  T  A  T           AGAT            A     A    TGTA    -G  G  C           -C           T   CC       CATTTTTTGT  TA
          CATGATATATA AT  G C TT AACTTG TTTTAAATT TA TT TG CCTTCAACTTT    GTGCACAAATAG CACTT AACT    TAAA  TT AA AAATAGACACA  AGTCTTACATG CAT  TACATGT          CC  
          ||||||||||| ||  | | || |||||| ||||||||| || || || |||||||||||    |||||||||||| ||||| ||||    ||||  || || |||||||||||  ||||||||||| |||  |||||||          ||  C
          GTATTATGTAT TA  C G GA TTGAAT GAAGTTTAA AT GA AC GGAGGTTGAAA    TACGTGTTTATC GTGAA TTGA    GTTT  AA TT TTTATTTGTGT  TCAGGATGTAC GTG  ATGTGCA          GG  
AAATAAAACC           A  AC T G  T      A         A  T  A  T           GTAT            C     A    -TAG    AA  G  A           AC           C   TT       ----TCCTGT  TG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End