SE3720541

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11609
  • Solanum lycopersicum
  • SE3720541
  • Mutator
  • M41
  • SL2.40ch02:38569659-38570091
  • AAGAGAAGT
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
A         GGATTAGGCTTCTCTCAATTTCTCTTCTTTTCATTTTTGCCAAGTTTCTATTTAGATTAATGACACGTGTCATATGTTAAAATAAATGATTAAGATTTAATTTTTCAAAGTAAATCTCTAACCATGATTTAGTTAATAAATACATTATATATCAAGTATTAAAATTATTATAATTTCATAATCTTAGCAACATATTATCTTGTCCAT
 AGAGAAGTT                                                                                                                                                                                                               
 |||||||||                                                                                                                                                                                                                
 TTAAAGAGA                                                                                                                                                                                                               
          AGAGAAGTAAAAGGGGTTCAAAGATAAACCTAATTACTTGCACAGTATCCAATTTTATTTACCAATTCTAAATTAAAAAGTTTCATTTGGAGACTGTTACTAAATCAATTATTTATGTAATATATAATTCATAATTTTTAATAATATTATATTGATAGAATCGTTGTATAGCAGAACAGATATGTATTTTGAAAAATAAAATATAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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