Plant MITE

SE3720542

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11610
Solanum lycopersicum
SE3720542
Mutator
M9
SL2.40ch05:1430438-1430762
ATTTCTTTA
GGCATAATACGTAAACATGATTCTTAACTTGATGTCAGTTGATAACTATGACCCTTAACTTTAGATGTGCACAAATAGACACTTAAACTTGTATAAAATTAAACAAGTCTATACATTCATCCTATATGACACCCTACATGAAAAAGTTGTGTCTAACGTGGCGTGTTACGTGTATCATGTCATGTAGGACACATGTGTCTACTTGTTCAATTTTATACAATTTAAGTGCCTACTTGCGCACATCCAAAGTCAAGGGTCATAGTTATCAACTGACGTCAAGTTAAGAGTCATATTTATGTATTATACC

Secondary structure and sequence

TSD TIR

5'

3'

ATTTCTTTA  C            C                                        A     A       A   A   A        C            A       CT      TCA            CCC      -  AAA       C
         GG ATAATACGTAAA ATGATTCTTAACTTGATGTCAGTTGATAACTATGACCCTT ACTTT GATGTGC CAA TAG CACTTAAA TTGTATAAAATT AACAAGT  ATACAT   TCCTATATGACA   TACATG AA   GTTGTGT 
         || |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||| |||||||| |||||||||||| |||||||  ||||||   ||||||||||||   |||||| ||   ||||||| T
         CC TATTATGTATTT TACTGAGAATTGAACTGCAGTCAACTATTGATACTGGGAA TGAAA CTACACG GTT ATC GTGAATTT AACATATTTTAA TTGTTCA  TGTGTA   AGGATGTACTGT   ATGTGC TT   CGGTGCA 
ATTTCTTTA  A            A                                        C     C       C   C   C        -            C       TC      CAC            ACT      A  GTG       A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720542

ATTTCTTTAGGCATAATACGTAAACATGATTCTTAACTTGATGTCAGTTGATAACTATGACCCTTAACTTTAGATGTGCACAAATAGACACTTAAACTTGTATAAAATTAAACAAGTCTATACATTCATCCTATATGACACCCTACATGAAAAAGTTGTGTCTAACGTGGCGTGTTACGTGTATCATGTCATGTAGGACACATGTGTCTACTTGTTCAATTTTATACAATTTAAGTGCCTACTTGCGCACATCCAAAGTCAAGGGTCATAGTTATCAACTGACGTCAAGTTAAGAGTCATATTTATGTATTATACCATTTCTTTA

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