Plant MITE

SE3750547

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11615
Solanum lycopersicum
SE3750547
PIF/harbinger
To10
SL2.40ch09:29847770-29847985
TTA
GGGCCGTTTAGTGTGAGGA

Secondary structure and sequence

TSD TIR

5'

3'

 TTA   C     A T  GA   TTAAAAATAATAGT          AAAAAAATTATCTTGTTTGTTTGCCATGTTTGGGATAACTTATTCCACCAAACATATCATAGTGATGGGA
    GGG CGTTT G GT  GGA              GATGGGATAA                                                                      
    ||| ||||| | ||  |||              ||||||||||                                                                       
    CCC GTAAA C CA  CCT              TTGTTCAATG                                                                      
ATTC   A     - -  -A   --------------          GGGTCCTATTCAATAGGACGCCAATCGATAGGACCCTATTGAATAGAGTGGTACATATACCCTATTGAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3750547

TTAGGGCCGTTTAGTGTGAGGATTAAAAATAATAGTGATGGGATAAAAAAAAATTATCTTGTTTGTTTGCCATGTTTGGGATAACTTATTCCACCAAACATATCATAGTGATGGGATAAGTTATCCCATATACATGGTGAGATAAGTTATCCCAGGATAGCTAACCGCAGGATAACTTATCCTGGGGTAACTTGTTTCCAACCAAATGACCCCTTA

Copy Cancel