SE3720548

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11616
  • Solanum lycopersicum
  • SE3720548
  • Mutator
  • M2
  • SL2.40ch03:11140410-11140735
  • CAAAATTAA
  • GGGATAATGCCCAAGTACCACCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCTTATTACCCCCTGAACTTATTTTATTAATAATTTATTACCCATTTTCGACCTACGTGGCACTA

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAAATTAA          C        A                               A                              -              TAA      A      -A    C A              ----------TCTT  G    CAA
         GGGATAATGC CAAGTACC CCTCAACCTATGCCCGAAATCTCAGAGACAC CTTATACTATACTAAGGTCTTATTACCCCC TGAACTTATTTTAT   TAATTT TTACCC  TTTT G CCTACGTGGCACTA              GT GGCC   
         |||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||   |||||| ||||||  |||| | ||||||||||||||              || ||||   C
         CCCTATTACG GTTCATGG GGAGTTGGATACGGGCTTTAGGGTCTCTGTG GAATATGATATGATTCCAGGATAATGGGGG ACTTGAATAAAATA   ATTAAA GATGGG  AAAA C GGATGCACCGTGAT              CA TTGG   
AATTAAAAC          T        G                               A                              G              TTC      A      GA    T -              CAAACTTTTTTTTT  G    TAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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