SE3720549

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11617
  • Solanum lycopersicum
  • SE3720549
  • Mutator
  • M9
  • SL2.40ch01:27318435-27319010
  • TCTCTTCTA
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
    TCTC     TTTTAGAATTTTTTGCAATTCTTATATTATTTTTATGGCATAATACATATATTGAACCCTAAACTTGACTTCAAATTTTAATTTTGACCTCCAACTTTCATAGTGCACAAACAAGCATTTTAACTATCCAACCTTTTAATAAATAAGCATGTGAGTCCTACCAGGAGAAACACGTGATGTGCACATAGTTTTAGCTAGTTAGGAGTAATTTTCGAGGCCCACAACAGTAAAAAAAATTATTAAATGACAATTCTACCCTTAATGAATCTCTTATATA
        TTCTA                                                                                                                                                                                                                                                                                     
        |||||                                                                                                                                                                                                                                                                                      
        GTACT                                                                                                                                                                                                                                                                                     
ATAAAACT     TTACTACATATCATAGTACTACGTTATTTTTATCCGTATTATGTATAAACCTGGGATTTAAACCAACATTTATAATTGAAACTGGAGGTTCAAAGTGTCACGTGTTTGTAAGTGAAATTGATAGTGCGACAAACAACTCGGTTTATCTCATATTACTTTTGTGACTATGTAAATAATGACTCAGTGAATTACCGATGTTGATTAATTTATTAAATGTACCGGTAAAATCTTAATTTGTTTTTATTTTATTCTATAACTAAACCTTTATATTTTTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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