Plant MITE

SE3720551

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11619
Solanum lycopersicum
SE3720551
Mutator
M2
SL2.40ch08:3277323-3277648
TTGTATTTA
GTATTTAGGGAAAATGCACAAGTACCCTCTCAACTTATACCTGAAATCTCAGAGACACACTTATACTATAC

Secondary structure and sequence

TSD TIR

5'

3'

 TT    TT     A                      T   A            G                   TAAG              -              A      T             A   C            G    AAAGAAAAAG     CA
   GTAT  AGGGA AATGCACAAGTACCCTCTCAAC TAT CCTGAAATCTCA AGACACACTTATACTATAC    GTCCTATTACCCCC TGAACTTATTTTAT AGTAAT TTCTACCCCTTTT GGC TATGTGGCACTA TTTG          TCAAC  
   ||||  ||||| |||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||    |||||||||||||| |||||||||||||| |||||| ||||||||||||| ||| |||||||||||| ||||          |||||   
   TATG  TCCCT TTACGTGTTCATGGGGGAGTTG ATA GGGTTTTAGAGT TCTGTGTGAATATGATATG    CAGGATAGTGGGGG ACTTGAATAAAATA TTATTA AAGATGGGGAAAA TTG ATGCACTGTGAT AAAC          GGTTG  
ATT    -T     A                      T   C            A                   TTTA              G              A      T             G   A            A    -----ACCCG     TG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720551

TTGTATTTAGGGAAAATGCACAAGTACCCTCTCAACTTATACCTGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTAGGCCTATGTGGCACTAGTTTGAAAGAAAAAGTCAACCAGTGTTGGGCCCACAAAATAGTGTCACGTAAGTTGAAAAGGGGTAGAATATTATTAATAAAATAAGTTCAGGGGGGTGATAGGACATTTGTATAGTATAAGTGTGTCTATGAGATTTTGGGCATATGTTGAGGGGGTACTTGTGCATTATCCCTTGTATTTA

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