Plant MITE

SE0720002

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11621
Thellungiella parvula
SE0720002
Mutator
M1
ch1-1:12093898-12094235
ATTTGAATA
ATTTGAATAGAGAAATTTTGAAAATACCACTTTCATGATACCATTTTTCAAAATTAT

Secondary structure and sequence

TSD TIR

5'

3'

         -A     A                         C  T         T   CACTGG   G    C              AACTTT    T  TG   CAAATTTTGAATTTTATAAGGGTATAGAACCCAAATTTATAAATTTTTATAAGAAATATTGTAGGGTT
 ATTTGAAT  GAGAA TTTTGAAAATACCACTTTCATGATA CA TTTTCAAAA TAT      TTG TGTT ATTTTCAAAAATAT      TTAT AA  TCA                                                                    
 ||||||||  ||||| ||||||||||||||||||||||||| || ||||||||| |||      ||| |||| ||||||||||||||      |||| ||  |||                                                                    T
 TAAGTTTA  CTCTT AAAATTTTTATGGTGAAAGTACTAT GT AAAAGTTTT ATG      AAC ACAG TAAAAGTTTTTATG      TAAA AA  TAT                                                                    
A        CC     -                         A  C         T   ATAATA   A    A              -----A    -  --   TTTTTTAATTAAAGATTCCCAAATATGTTGTATAAATATTCTAATCATTAGTAAAATATTTGAAATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0720002

ATTTGAATAGAGAAATTTTGAAAATACCACTTTCATGATACCATTTTTCAAAATTATCACTGGTTGGTGTTCATTTTCAAAAATATAACTTTTTATTAATGTCACAAATTTTGAATTTTATAAGGGTATAGAACCCAAATTTATAAATTTTTATAAGAAATATTGTAGGGTTTTATAAAGTTTATAAAATGATTACTAATCTTATAAATATGTTGTATAAACCCTTAGAAATTAATTTTTTTATAAAAATAGTATTTTTGAAAATAGACAACAAATAATAGTATTTTTGAAAACTGATATCATGAAAGTGGTATTTTTAAAATTCTCCCATTTGAATA

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