Plant MITE

SE0750005

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11624
Thellungiella parvula
SE0750005
PIF/harbinger
To2
ch7-6:1122578-1122766
TTA
AGAGCAACTCCATTGGT

Secondary structure and sequence

TSD TIR

5'

3'

TT    C  C             -    TACATGGGTCTCTAAACATTGTTTATTAATTTTTTCTTAAGAGATTGTCTTAAATTTCTTAAATAAG
  AGAG AA TCCATTGGTGAGA TCCA                                                                   
  |||| || ||||||||||||| ||||                                                                    
  TCTC TT AGGTAACCACAAA AATT                                                                   
AT    A  A             A    TTTAAGAATTTCCCAAAGAATTTAATTTTTCTTTTCTTTTATTTATCGAATTTTAACTTCTTTCAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0750005

TTAGAGCAACTCCATTGGTGAGATCCATACATGGGTCTCTAAACATTGTTTATTAATTTTTTCTTAAGAGATTGTCTTAAATTTCTTAAATAAGAAACTTTCTTCAATTTTAAGCTATTTATTTTCTTTTCTTTTTAATTTAAGAAACCCTTTAAGAATTTTTAAAAAACACCAATGGAATTACTCTTA

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