SE0720007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11626
  • Thellungiella parvula
  • SE0720007
  • Mutator
  • M1
  • ch2-4:1017569-1017922
  • TAGATTATT
  • TGGAAAAATTTTAAAAATAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGATTAT    A         -      CACTCTCA            -     A   C  -A      T       A          T     C      CTTTATAAAAAATTAATATATAAAAATTTATAAAACATATTTATAAGATTTATAATCATGCAATAAACTTTATAAAAA
        TGGA AAATTTTAA AAATAT        TGATATCATTTT CAAAA TGT AT  ACTTGT GTCTATT TAAAAAATAC ATTTT ATAAAT                                                                              
        |||| ||||||||| ||||||        |||||||||||| ||||| ||| ||  |||||| ||||||| |||||||||| ||||| ||||||                                                                               
        ATCT TTTAAAATT TTTATG        ACTATAGTGAAA GTTTT ATA TG  TGAATA CAGGTAA GTTTTTTATG TAAAA AATATT                                                                              
 ATATTAG    C         C      ATAAAAAC            A     A   A  AA      -       A          T     -      CACAATATTAAATATTCTAAAATATTTCTGTCTCAAATATTTTATACAAAATATTTTAAAATATTCTTTATAATATTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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