SE0850001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11630
  • Thellungiella salsuginea
  • SE0850001
  • PIF/harbinger
  • To1
  • Scaffold_21914:7457-7726
  • TTA
  • AGACCATCTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C         -----------------CC   C    AATTTCACTGCAAAATAGAGTTTGGAGCAAGATTATCTCCAACCCTACTCCAAATCTCACTCCAAAATGAAATAAAAAATGGAGTTACTCCATATATGGAGC
  AGA CATCTCCAA                   CTA TGCA                                                                                                      
  ||| |||||||||                   ||| ||||                                                                                                       
  TCT GTAGAGGTT                   GAG ATAA                                                                                                      
AT   C         ACATACTGAGATATAAAAA   -    AACCTCATTGAGGTTTTATCTCAACATAAAATGAGGTTACATTCGAAGTAAAAACGAGGTTTTACCTCAATACTGATTTTTTTACCTCTTTGAGATAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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